SDK for running DeepLabCut on a live video stream
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Jul 17, 2026 - Python
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optogenetics
Here are 30 public repositories matching this topic...
Precision current source, with optional optical feedback, for driving LEDs and laser diodes
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Oct 7, 2024 - C++
A virtual optogenetics laboratory
python neuroscience computational-neuroscience neuron brain jupyter-widget optogenetics opsin brian2 brainweb
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Jul 24, 2023 - Python
ONI-compatible hardware, firmware, and host APIs for advanced neuroscience experiments.
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May 23, 2024 - HTML
Closed-Loop, Electrophysiology, and Optophysiology experiment simulation testbed for mesoscale neuroscience
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Jul 25, 2026 - Python
System for wireless optogenetic stimulation
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Jun 14, 2022 - C++
LITOS - an easy-to-use tool for optogenetic cell stimulation
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Jan 29, 2026 - C
Toolkit for the Empirical Design of Stereotactic Brain Implants
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May 15, 2020 - Python
Multi-unit spike analysis in ventral midbrain-striatal-cortical organoids (MISCOs) pre- and post- optogenetic stimulation.
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Dec 5, 2023 - Jupyter Notebook
Modular analysis pipeline for videos of freely walking and socializing fly groups that includes keypoint tracking, behavior classification, and optogenetics-specific summary statistics and data visualization
tracking machine-learning computer-vision neuroscience data-visualization behavior-analysis optogenetics
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Jun 24, 2026 - MATLAB
A programmable light delivery box for optogenetics experiments.
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Aug 24, 2019 - C++
Electrophysiology analysis in ventral midbrain-striatal-cortical organoids (MISCOs) pre- and post- optogenetic stimulation.
signal-processing calcium-imaging probes optogenetics extracellular-recordings optogenetics-stimulation organoids multi-unit
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Dec 5, 2023 - Jupyter Notebook
Contrast Optimized Stimulation player
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Jun 1, 2023 - Python
RY's module for real-time, closed-loop interruption of brain activity --- detects theta (or beta) phase and triggering optogenetic disruption using the SpikeGadgets software environment (https://spikegadgets.com/)
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Jan 29, 2024 - C++
hybrid-drive for optogenetic pharmacology and electrophysiology
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Oct 24, 2018
A solution to the task given by the Oberseminar of Messtechnik Institute of TU Dresden in 2021
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Jan 30, 2022 - Python
Contrast Optimized Stimulation generator
genetic-algorithm neuroimaging glm fmri biomedical optogenetics sensory-stimulation stimulus-design contrast-optimization
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Oct 9, 2017 - Python
Opto-fmri decoding of locus coeruleus firing patterns using Graph Neural Networks and the BrainGNN framework
machine-learning neuroscience mouse pytorch mri top-k fmri brain atlas graph-convolutional-networks optogenetics pyg graph-neural-networks pytorch-geometric gnn braingnn
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Feb 4, 2024 - Jupyter Notebook
Experiment automation for Coherent's Monaco Laser
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Jul 9, 2025 - Python
This repo contains the reorganised research codebase for LC-CA1 electrophysiology, behaviour, two-photon imaging, optogenetics, and computational modelling
python deep-learning matlab neuroscience computational-neuroscience electrophysiology image-segmentation behavior-analysis calcium-imaging hippocampus ca1 optogenetics dopamine systems-neuroscience neuromodulation two-photon-imaging norepinephrine locus-coeruleus
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Jul 24, 2026 - Python
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