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SYNY-v1.3.2

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@Pombert-JF Pombert-JF released this 08 Feb 12:53

Bugfix release

  • list_maker.pl: Fixed an issue arising from LOCUS and ACCESSION tags being different in NCBI GBFF files, e.g.:
    LOCUS JBLUPJ010000002
    ACCESSION JBLUPJ010000002 JBLUPJ010000000
    list_maker.pl now looks for the ACCESSION base (located to the right) and comprehensively reassigns the missing NCBI accessions.
  • gff3_to_gbff.pl: Fixed an issue where transcript entries in GBFF files were improperly reassigned as mRNA; this reassignment was intended only for AGAT GBFF files.
  • gff3_to_gbff.pl and fasta_to_gbff.pl: Added a fix for single contigs/chromosomes >= 1 Gbp.