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1. MSAmanda MSAmanda Public

   MS Amanda is a scoring system to identify peptides out of tandem mass spectrometry data using a database of known proteins.

   3

2. MSAndrea MSAndrea Public

   MS Andrea is an open modification search engine that is designed to directly identify peptide modifications on the PSM level.

   3

3. MSAnnika MSAnnika Public

   MS Annika is a crosslink search engine based on MS Amanda, aimed at identifying crosslinks of cleavable and non-cleavable crosslinkers from MS2 and MS3 spectra.

   10

4. MSAnnika_Extensions MSAnnika_Extensions Public

   List of all available extensions for our cross-linking search engine MS Annika.

5. MSAnnika_Spectral_Library_exporter MSAnnika_Spectral_Library_exporter Public

   Generate a spectral library for Spectronaut from MS Annika results.

   Python 1

6. pyXLMS pyXLMS Public

   A python package to process protein cross-linking data.

   Python 4 2