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get_db("organisms") and oma_organisms() fail

Status: Open.

#128 In saezlab/OmnipathR;

· hberger opened on Jun 23, 2026

Stale cached collectri data fails collectri() with cryptic error message

Status: Open.

#127 In saezlab/OmnipathR;

· ppm1337 opened on Apr 16, 2026

Retrieving interactions error: index out of bounds in modifyList(defaults, .)

Status: Open.

#126 In saezlab/OmnipathR;

· Rachmanichou opened on Feb 23, 2026

Bioconductor failure and risk of deprecation

Status: Open.

#125 In saezlab/OmnipathR;

· lshep opened on Jan 6, 2026

Incompatibility with httr2 1.2.2?

Status: Open.

#124 In saezlab/OmnipathR;

· bbimber opened on Dec 28, 2025

Generating goslim fails due to curl error

Status: Open.

#123 In saezlab/OmnipathR;

· wudustan opened on Aug 14, 2025

curated_ligand_receptor_interactions() failing

Status: Open.

#122 In saezlab/OmnipathR;

· annajbott opened on Aug 1, 2025

map_int() error

Status: Open.

#121 In saezlab/OmnipathR;

· gabrigammal opened on Aug 1, 2025

failed to download

Status: Open.

#117 In saezlab/OmnipathR;

· Admitabc opened on Jan 10, 2025

Changing directory path for omnipathR Installation

questionA user question or anything not obviously bugA user question or anything not obviously bug

Status: Open.

#115 In saezlab/OmnipathR;

· min0609 opened on Dec 20, 2024

kegg_pathway_annotations fails with uninformative error

Status: Open.

#113 In saezlab/OmnipathR;

· danhalligan-la opened on Nov 3, 2024

Parallelization error when optimizing parameters for NicheNet

Status: Open.

#105 In saezlab/OmnipathR;

· tkapello opened on Aug 1, 2024